##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index16_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	18318752	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.10195994792658	33.0	31.0	34.0	30.0	34.0
2	32.3489986108224	34.0	31.0	34.0	30.0	34.0
3	32.37044668763462	34.0	31.0	34.0	30.0	34.0
4	36.0280407202412	37.0	35.0	37.0	35.0	37.0
5	35.910497942217894	37.0	35.0	37.0	35.0	37.0
6	35.882705055453556	37.0	35.0	37.0	35.0	37.0
7	35.82861589042747	37.0	35.0	37.0	35.0	37.0
8	35.82331749455422	37.0	35.0	37.0	35.0	37.0
9	37.52549949909251	39.0	37.0	39.0	35.0	39.0
10-14	37.68394465954886	39.2	37.2	39.4	34.2	39.4
15-19	38.74268742761516	40.0	38.0	41.0	34.4	41.0
20-24	38.598229813908716	40.0	38.0	41.0	34.0	41.0
25-29	38.35611205392158	40.0	38.0	41.0	33.8	41.0
30-34	38.040684682013264	40.0	37.4	41.0	33.0	41.0
35-39	37.72716169747808	40.0	37.0	41.0	32.2	41.0
40-44	37.50113116876084	39.6	36.4	41.0	31.8	41.0
45-49	37.05971939573176	39.0	35.4	40.6	31.0	41.0
50-54	36.725643198838	39.0	35.0	40.4	30.4	41.0
55-59	36.487287147072024	38.2	35.0	40.2	30.8	41.0
60-64	35.78582417623209	37.0	34.0	40.0	30.0	41.0
65-69	35.01791700657337	35.6	34.0	39.2	29.0	41.0
70-74	34.16973828784843	35.0	33.0	37.8	28.6	39.8
75-79	33.04137782966875	34.8	32.4	36.2	27.0	39.0
80-84	32.735338848410635	35.0	33.0	35.4	27.0	37.2
85-89	31.904868715947458	35.0	32.2	35.0	25.6	36.2
90	31.398194047280075	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	17.0
12	85.0
13	724.0
14	3184.0
15	8314.0
16	14027.0
17	19269.0
18	24400.0
19	29294.0
20	36245.0
21	43373.0
22	51102.0
23	61175.0
24	77015.0
25	99699.0
26	132675.0
27	176879.0
28	233606.0
29	302554.0
30	387299.0
31	488270.0
32	618793.0
33	796424.0
34	1076606.0
35	1545322.0
36	2365717.0
37	3454536.0
38	3929653.0
39	2284263.0
40	58232.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.97517865581893	12.917641446110997	10.134366364767775	50.9728135333023
2	22.18059396185941	19.450069524386816	35.49222676304586	22.87710975070791
3	25.583331222563633	21.76535825147914	22.751555346128384	29.899755179828848
4	27.736725733281393	28.073795638480174	19.404531487734538	24.784947140503892
5	29.311609218793944	29.95383091599253	21.427218404397856	19.30734146081567
6	24.088769802659048	32.94841264295734	21.875911634154992	21.086905920228627
7	21.51663008214186	18.815010773373743	37.53398102772581	22.134378116758587
8	21.556916104328504	22.05603307474221	29.303093354831162	27.08395746609813
9	21.63809730315406	21.00103835493484	31.665070730253227	25.695793611657873
10-14	24.70220648898295	26.27359793461602	24.59717010663139	24.42702546976964
15-19	25.07716043991211	25.14630175778282	25.03393360546889	24.74260419683618
20-24	24.85981084746383	25.38707665911123	25.348609460954595	24.40450303247034
25-29	24.75069968424573	25.386831952539822	25.296377189005277	24.56609117420917
30-34	24.80309739783845	25.299536845032655	25.22578932944078	24.67157642768812
35-39	24.8292057230877	25.431942580455534	25.169589993287456	24.569261703169307
40-44	24.80855406465794	25.252930404110202	25.314213978922073	24.62430155230978
45-49	24.711636872861117	25.309988464666983	25.273711133922994	24.704663528548906
50-54	24.754801024775002	25.38985748056416	25.291326209659797	24.56401528500104
55-59	24.772145800353915	25.315848262867718	25.251590155071817	24.66041578170655
60-64	24.68009175832311	25.33294359559398	25.361975221374745	24.62498942470816
65-69	24.692701400184724	25.43310012242574	25.35617543806554	24.518023039323996
70-74	24.747120014335238	25.372811604170476	25.260378646103536	24.619689735390747
75-79	24.719734103854265	25.34032468704156	25.34253883601468	24.597402373089494
80-84	24.664700621316243	25.446825097552388	25.378817216630132	24.509657064501233
85-89	24.746975534868906	25.43875537537239	25.282972258800818	24.53129683095788
90	24.470164504591967	25.536768371411746	25.496874310124245	24.496192813872042
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.94799218912122
2	45.05770371256732
3	55.48308640239248
4	52.521672873785285
5	48.61895067960961
6	45.17567572288767
7	43.65100819890044
8	48.64087357042663
9	47.33389091481193
10-14	49.12923195875259
15-19	49.819764636748296
20-24	49.26431387993417
25-29	49.3167908584549
30-34	49.47467382552657
35-39	49.39846742625701
40-44	49.43285561696772
45-49	49.41630040141003
50-54	49.31881630977604
55-59	49.43256158206047
60-64	49.30508118303128
65-69	49.21072443950872
70-74	49.36680974972598
75-79	49.317136476943766
80-84	49.174357685817476
85-89	49.27827236582679
90	48.966357318464006
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	6.0
1	5.0
2	2.0
3	2.0
4	4.5
5	4.0
6	8.5
7	13.5
8	22.0
9	44.5
10	58.0
11	73.0
12	126.0
13	217.5
14	346.5
15	548.5
16	995.5
17	1828.0
18	3077.5
19	5330.0
20	6845.0
21	9481.0
22	16038.0
23	25652.5
24	38991.0
25	57117.0
26	79771.5
27	107628.5
28	138079.0
29	170127.0
30	187408.0
31	204617.0
32	239656.0
33	278728.5
34	321376.5
35	362708.5
36	405320.0
37	453461.0
38	495584.0
39	529786.5
40	547322.0
41	559000.5
42	582373.5
43	604816.5
44	619865.0
45	628085.0
46	630098.0
47	625767.0
48	624741.5
49	627017.5
50	627895.0
51	620196.5
52	611457.5
53	601785.5
54	595949.5
55	596077.5
56	586844.5
57	571811.0
58	553730.0
59	531574.0
60	519031.0
61	504224.5
62	474694.5
63	437644.0
64	392145.0
65	348785.0
66	305978.5
67	260056.5
68	217254.0
69	177091.0
70	156427.0
71	138976.5
72	107017.5
73	80704.5
74	58145.5
75	39378.0
76	25658.0
77	15657.5
78	8813.0
79	4556.0
80	2850.0
81	2115.5
82	997.0
83	460.0
84	217.0
85	94.0
86	49.5
87	30.5
88	18.0
89	10.0
90	7.0
91	5.5
92	4.5
93	3.0
94	1.0
95	0.5
96	0.0
97	0.5
98	0.5
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.4064359842853924
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0024128281227891505
8	0.0
9	0.0019269871659379416
10-14	0.0018418285263100893
15-19	2.09621266776252E-4
20-24	0.0015699759459596374
25-29	0.0011092458700243334
30-34	0.0016616852501742476
35-39	0.004410780821750303
40-44	0.003439098908047884
45-49	0.0023211188185745402
50-54	0.0027654722330429497
55-59	7.085635528009768E-4
60-64	5.928351451015876E-4
65-69	2.9914701612860967E-4
70-74	0.004441350589821839
75-79	0.0010994198731441968
80-84	0.0015656088362351322
85-89	0.0011310814186468597
90	0.001288297368729049
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.8318752E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.66408598845419
#Duplication Level	Relative count
1	100.0
2	30.503246753246753
3	15.652394480519481
4	9.559659090909092
5	6.476258116883117
6	4.785917207792208
7	3.6941964285714284
8	2.940340909090909
9	2.341720779220779
10++	26.968344155844157
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	4697750	2.9500678	5.0486407	2
GAAGA	3911460	2.5461416	5.2064376	2
CTTCT	3964220	2.5295208	5.460743	1
CCAGG	3771205	2.5226495	5.1185026	1
AAGAA	3941740	2.5201757	5.1681824	2
CCTGG	3775055	2.5157557	5.824864	1
TCTTC	3820750	2.4379745	5.0060253	7
CTGGA	3661390	2.4069924	8.406651	1
TCCAG	3549585	2.3233895	5.1632547	2
CTCCT	3522340	2.2869673	6.967184	1
CTGGG	3341870	2.236758	8.069259	1
CAGGA	3335155	2.2007778	5.4742637	1
CTTCA	3428125	2.1956785	5.5424023	1
CTCCA	3314065	2.1598384	7.293041	1
CCCAG	3215575	2.1416633	6.828669	1
CAGAA	3231890	2.0946717	5.222926	1
CTCTG	3089935	2.0149405	6.219949	1
CTGGC	2804530	1.8689829	5.0909667	1
CTGAA	2861570	1.8477033	5.617836	1
TGGAA	2838880	1.8410227	5.0606084	2
CTCAG	2655310	1.7380397	6.1342883	1
CTTTG	2659910	1.7046362	5.100484	1
CTTGG	2495725	1.6345335	5.2715626	1
>>END_MODULE
